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[MRG] add --scaled to sbt index to downsample signatures #378

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merged 11 commits into from
Dec 26, 2018

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ctb
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@ctb ctb commented Nov 26, 2017

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

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codecov-io commented Nov 26, 2017

Codecov Report

Merging #378 into master will decrease coverage by 0.08%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #378      +/-   ##
==========================================
- Coverage   88.57%   88.48%   -0.09%     
==========================================
  Files          25       25              
  Lines        3763     3778      +15     
  Branches       37       37              
==========================================
+ Hits         3333     3343      +10     
- Misses        430      435       +5
Impacted Files Coverage Δ
sourmash/sourmash_args.py 95.63% <ø> (ø) ⬆️
sourmash/commands.py 89.33% <100%> (+0.09%) ⬆️
sourmash/search.py 94.23% <100%> (+0.27%) ⬆️
sourmash/sbtmh.py 83.08% <0%> (-3.68%) ⬇️

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@ctb ctb changed the title [WIP] add --scaled to sbt index to downsample signatures [MRG] add --scaled to sbt index to downsample signatures Dec 26, 2018
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ctb commented Dec 26, 2018

This is ready for review!

The code in the actual search function is a bit ugly but is as clean as I could make it without too much refactoring; I hope to clean it up in #556!

@luizirber luizirber merged commit 76f087a into master Dec 26, 2018
@luizirber luizirber deleted the update/sbt_index branch December 26, 2018 23:04
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3 participants